Ghost, first thing, avoid the huge number of blank paragraphs at the end of the post. Your message is followed by a large blank space.
About the problem, can you remember the name of the file and its path?
What did you answer when the virus message come? Delete or send to Chest?
If you open the Chest, is the file there on the Infected folder?
Chest is safe for storage.
You can let the files there for two weeks, for instance, then if you’re sure they’re infected and are not necessary system files, just delete them 8)