I have a attached a sample innosetup script (with private portions being censored by ***) and compiled it using InnoSetup 5.5.6 in InnoIDE 1.0.0.0078.
Downloadsource: http://www.baeckerprogramm.de/downloads/setup.exe
It “features” the same errors as in my screenshot from earlier.

Thanks for clarifying the certificate root issue and reassuring a trusted installer would be excepted. I will forward this information, so we will decide when to apply for a trusted code signing certificate.

PS: Extention limitation fail… due to .iss being blocked my whole text is lost now. So this is just a summary.
PS2: “winsdk” obviously refers to signtool.exe from the Microsoft Windows SDK (7.1A in my case).