If that is the case (and I don’t see where these other signatures are unless you are suggesting this as an option), there would be two VPS files and not just the one, the 400.vps, currently 6769 Kb in my system.
Unless there were a historical (h) VPS signature list say 400h.vps and the latest (l) vps signatures say 400l.vps being combined when the manual update is downloaded and run to make the 400.vps file.
There have been a few occasions on the forums where the 400.vps file has been reported as destroyed and that would have to be rebuilt so this to would have to be looked at how it is restored, could just combine the 400h.vps and 400l.vps, creating a new 400.vps and all that would be required is a manual vps update with the normal incremental update.
Don’t know if I have explained that very well.