system
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I meant the Secunia online Software Inspector as recommended, sorry if I was unclear on that…
Edit: This is what happens:
I click on the provided link and then on the “start scanner” button. Then the online inspector site opens and waterfox tells me I need additional plugins to view all content. I have Java installed, yet in the bottom left corner it says "loading java applet try “X” of 50, when the counter reaches 50 there is a popup that informs me there might be a problem with java…
But other than that the system is stable, no alerts and the autorun entries, folders etc are all gone, so I am very, very happy and grateful 
[quote author=magna86 link=topic=132819.msg978683#msg978683 date=1377025495]
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Visiting Secunia Online Software Inspector …
Make sure all your applications and browsers are up-to-date by visiting Secunia Online Software Inspector here:
Free Online Computer Scan - Online Software Inspector (OSI) - Secunia
http://secunia.com/vulnerability_scanning/online/
[*] Click ‘Start Scanner’
[*] Wait for Status/Currently Processing: at the lower left to say ‘Java Applet loaded successfully. (allow java to run) Press “Start” to begin.’
[*] Click ‘Start’.
[*] The scan should take less than a minute or so.
[*] When done, download and install all the recommended updates.