virus /malware affecting my website?? Please help

I have had this virus malware hitting my site. We have cleaned all files and changed ftp password as well as wrapped it and it keeps affecting the site? How do we get rid of it??? JS:Obfuscated-CU [Trj]
trojan
It seems to be only showing warnings in google/chrome & safari??

What address is this trojan infecting?

I had to take down the site until we figure out what is going on so it does not affect any of my customers.

You should look at your HTML script, find the javascript trojan, and remove it.

Just a side note:

Please modify the address to make it inactive (i.e. change http to hXXp) to prevent others from potentially becoming infected.

You could also have a look at this:

Hi n2shoes33,

Can you give the site’s address as htXp://wXw.etc…
Then we can have a look what the Web Page Security Report over the last 90 days reported,
in most cases they will give the malicious scipt there as well,

polonus

Also see - Every 3.6 seconds a website is infected http://forum.avast.com/index.php?topic=47096.msg396648#msg396648.

Will I be able to update any old data base code without having to rebuild the entire site?

Your problem really isn’t just replacing the old database, uploading your clean back-up copy of the site (you do have one don’t you), but closing the vulnerability or the hack could be back. For that you will most certainly have to talk to your host. So you will need to pay particular attention to the Hacked Sites quote above.